Our group publishes papers presenting new methodologies, describing the results of studies that use our software, and reviewing current topics in the field of Bioinformatics. Scroll down or click here for a complete list of papers produced by our lab. Since 2013, we write blog posts summarizing new research papers and review articles:


Mouse Genetics

Population Structure

Review Articles


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Mangul, Serghei; Yang, Harry Taegyun; Hormozdiari, Farhad; Dainis, Alex; Tseng, Elizabeth; Ashley, Euan A; Zelikovsky, Alex; Eskin, Eleazar

HapIso : An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads. Journal Article

IEEE Trans Nanobioscience, 16 (2), pp. 108-115, 2017, ISSN: 1558-2639.

Abstract | Links | BibTeX | Tags: Allele Specific Expression, Haplotype Phasing, Haplotyping from Sequences, RNAseq, Sequence Assembly


Hormozdiari, Farhad; Eskin, Eleazar

Memory efficient assembly of human genome. Journal Article

J Bioinform Comput Biol, pp. 1550008, 2014, ISSN: 1757-6334.

Abstract | Links | BibTeX | Tags: Sequence Assembly


Parrish, Nathaniel; Sudakov, Benjamin ; Eskin, Eleazar

Genome reassembly with high-throughput sequencing data Journal Article

BMC Genomics, 14 (Suppl 1), pp. S8, 2013, ISSN: 1471-2164.

Abstract | Links | BibTeX | Tags: Sequence Assembly


Parrish, Nathaniel; Hormozdiari, Farhad ; Eskin, Eleazar

Assembly of non-unique insertion content using next-generation sequencing. Journal Article

BMC Bioinformatics, 12 Suppl 6 , pp. S3, 2011, ISSN: 1471-2105.

Abstract | Links | BibTeX | Tags: Sequence Assembly, Structural Variation