Our group publishes papers presenting new methodologies, describing the results of studies that use our software, and reviewing current topics in the field of Bioinformatics. Scroll down or click here for a complete list of papers produced by our lab. Since 2013, we write blog posts summarizing new research papers and review articles:


Mouse Genetics

Population Structure

Review Articles


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Mangul, Serghei; Yang, Harry Taegyun; Strauli, Nicolas; Gruhl, Franziska; Porath, Hagit T; Hsieh, Kevin; Chen, Linus; Daley, Timothy; Christenson, Stephanie; Wesolowska-Andersen, Agata; Spreafico, Roberto; Rios, Cydney; Eng, Celeste; Smith, Andrew D; Hernandez, Ryan D; Ophoff, Roel A; Santana, Jose Rodriguez; Levanon, Erez Y; Woodruff, Prescott G; Burchard, Esteban; Seibold, Max A; Shifman, Sagiv; Eskin, Eleazar; Zaitlen, Noah

ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues. Journal Article

Genome Biol, 19 (1), pp. 36, 2018, ISSN: 1474-760X.

Abstract | Links | BibTeX | Tags: RNAseq


Mangul, Serghei; Yang, Harry Taegyun; Hormozdiari, Farhad; Dainis, Alex; Tseng, Elizabeth; Ashley, Euan A; Zelikovsky, Alex; Eskin, Eleazar

HapIso : An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads. Journal Article

IEEE Trans Nanobioscience, 16 (2), pp. 108-115, 2017, ISSN: 1558-2639.

Abstract | Links | BibTeX | Tags: Allele Specific Expression, Haplotype Phasing, Haplotyping from Sequences, RNAseq, Sequence Assembly


Lagarrigue, Sandrine; Hormozdiari, Farhad ; Martin, Lisa Joy ; Lecerf, Frédéric ; Hasin, Yehudit ; Rau, Christoph ; Hagopian, Raffi ; Xiao, Yu ; Yan, Jun ; Drake, Thomas A; Ghazalpour, Anatole ; Eskin, Eleazar ; Lusis, Aldons J

Limited RNA Editing in Exons of Mouse Liver and Adipose Tissue. Journal Article

Genetics, 2013, ISSN: 1943-2631.

Abstract | Links | BibTeX | Tags: RNAseq