Publications

Our group publishes papers presenting new methodologies, describing the results of studies that use our software, and reviewing current topics in the field of Bioinformatics. Scroll down or click here for a complete list of papers produced by our lab. Since 2013, we write blog posts summarizing new research papers and review articles:

GWAS

Mouse Genetics

Population Structure

Review Articles

Publications

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2013

Wang, Zhanyong; Hormozdiari, Farhad ; Yang, Wen-Yun Y; Halperin, Eran ; Eskin, Eleazar

CNVeM: Copy Number Variation Detection Using Uncertainty of Read Mapping. Journal Article

J Comput Biol, 2013, ISSN: 1557-8666.

Abstract | Links | BibTeX | Tags: Sequencing Next Generation, Structural Variation

2012

Wang, Zhanyong; Hormozdiari, Farhad ; Yang, Wen-Yun - Y; Halperin, Eran ; Eskin, Eleazar

CNVeM: Copy Number Variation Detection Using Uncertainty of Read Mapping Conference

Research in Computational Molecular Biology, University of California Springer Berlin Heidelberg, 2012.

Abstract | Links | BibTeX | Tags: Structural Variation

2011

Dan He Farhad Hormozdiari, Nicholas Furlotte ; Eskin, Eleazar

Efficient Algorithms for Tandem Copy Number Variation Reconstruction in Repeat-rich Regions. Journal Article

Bioinformatics, 2011, ISSN: 1367-4811.

Abstract | Links | BibTeX | Tags: Structural Variation

Parrish, Nathaniel; Hormozdiari, Farhad ; Eskin, Eleazar

Assembly of non-unique insertion content using next-generation sequencing. Journal Article

BMC Bioinformatics, 12 Suppl 6 , pp. S3, 2011, ISSN: 1471-2105.

Abstract | Links | BibTeX | Tags: Sequence Assembly, Structural Variation

2010

Dan He, Nicholas Furlotte ; Eskin
, Eleazar

Detection and reconstruction of tandemly organized de novo copy number variations. Journal Article

BMC Bioinformatics, 11 Suppl 11 , pp. S12, 2010, ISSN: 1471-2105.

Abstract | Links | BibTeX | Tags: Structural Variation

He, Dan; Eskin, Eleazar

Effective Algorithms for Fusion Gene Detection Conference

Algorithms in Bioinformatics, 6293 , Lecture Notes in Computer Science Dept. of Comp. Sci., Univ. of California Los Angeles, Los Angeles, CA 90095 USA Springer Berlin / Heidelberg, 2010.

Abstract | BibTeX | Tags: Structural Variation

2007

Corona, Erik; Raphael, Benjamin ; Eskin, Eleazar

Identification of Deletion Polymorphisms from Haplotypes Conference

Lecture Notes in Computer Science, 4453/2007 , Lecture Notes in Computer Science Springer Berlin / Heidelberg, 2007, ISSN: 0302-9743 (Print) 1611-3349 (Online).

Abstract | Links | BibTeX | Tags: Structural Variation