Publications

Our group publishes papers presenting new methodologies, describing the results of studies that use our software, and reviewing current topics in the field of Bioinformatics. Scroll down or click here for a complete list of papers produced by our lab. Since 2013, we write blog posts summarizing new research papers and review articles:

GWAS

Mouse Genetics

Population Structure

Review Articles

Publications

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2017

Mangul, Serghei; Yang, Harry Taegyun; Hormozdiari, Farhad; Dainis, Alex; Tseng, Elizabeth; Ashley, Euan A; Zelikovsky, Alex; Eskin, Eleazar

HapIso : An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads. Journal Article

IEEE Trans Nanobioscience, 16 (2), pp. 108-115, 2017, ISSN: 1558-2639.

Abstract | Links | BibTeX | Tags: Allele Specific Expression, Haplotype Phasing, Haplotyping from Sequences, RNAseq, Sequence Assembly

2013

Yang, Wen-Yun Y; Hormozdiari, Farhad ; Wang, Zhanyong ; He, Dan ; Pasaniuc, Bogdan ; Eskin, Eleazar

Leveraging Multi-SNP Reads from Sequencing Data for Haplotype Inference. Journal Article

Bioinformatics, 2013, ISSN: 1367-4811.

Abstract | Links | BibTeX | Tags: Haplotype Phasing, Haplotyping from Sequences, Imputation

2006

Marchini, Jonathan; Cutler, David ; Patterson, Nick ; Stephens, Matthew ; Eskin, Eleazar ; Halperin, Eran ; Lin, Shin ; Qin, Zhaohui S; Munro, Heather M; Abecasis, Goncalo R; Donnelly, Peter ; Consortium, International HapMap

A comparison of phasing algorithms for trios and unrelated individuals. Journal Article

Am J Hum Genet, 78 (3), pp. 437-50, 2006, ISSN: 0002-9297.

Abstract | Links | BibTeX | Tags: Haplotype Phasing

Eskin, Eleazar; Sharan, Roded; Halperin, Eran

A note on phasing long genomic regions using local haplotype predictions. Journal Article

J Bioinform Comput Biol, 4 (3), pp. 639-47, 2006, ISSN: 0219-7200.

Abstract | Links | BibTeX | Tags: Haplotype Phasing

2005

Zaitlen, Noah A; Kang, Hyun Min ; Feolo, Michael L; Sherry, Stephen T; Halperin, Eran ; Eskin, Eleazar

Inference and analysis of haplotypes from combined genotyping studies deposited in dbSNP. Journal Article

Genome Res, 15 (11), pp. 1594-600, 2005, ISSN: 1088-9051.

Abstract | Links | BibTeX | Tags: Haplotype Phasing

2004

Halperin, Eran; Eskin, Eleazar

Haplotype reconstruction from genotype data using Imperfect Phylogeny. Journal Article

Bioinformatics, 20 (12), pp. 1842-9, 2004, ISSN: 1367-4803.

Abstract | Links | BibTeX | Tags: Haplotype Phasing

2003

Eskin, Eleazar; Halperin, Eran; Karp, Richard M

Efficient reconstruction of haplotype structure via perfect phylogeny. Journal Article

J Bioinform Comput Biol, 1 (1), pp. 1-20, 2003, ISSN: 0219-7200.

Abstract | Links | BibTeX | Tags: Haplotype Phasing

Eskin, Eleazar; Halperin, Eran; Karp, Richard

Large scale reconstruction of haplotypes from genotype data Conference

RECOMB '03: Proceedings of the seventh annual international conference on Research in computational molecular biology, ACM, New York, NY, USA, 2003, ISBN: 1-58113-635-8.

Abstract | Links | BibTeX | Tags: Haplotype Phasing