Our group publishes papers presenting new methodologies, describing the results of studies that use our software, and reviewing current topics in the field of Bioinformatics. Scroll down or click here for a complete list of papers produced by our lab. Since 2013, we write blog posts summarizing new research papers and review articles:


Mouse Genetics

Population Structure

Review Articles


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Tompa, Martin; Li, Nan ; Bailey, Timothy L; Church, George M; Moor, Bart De ; Eskin, Eleazar ; Favorov, Alexander V; Frith, Martin C; Fu, Yutao ; Kent, James W; Makeev, Vsevolod J; Mironov, Andrei A; Noble, William Stafford ; Pavesi, Giulio ; Pesole, Graziano ; Régnier, Mireille ; Simonis, Nicolas ; Sinha, Saurabh ; Thijs, Gert ; van Helden, Jacques ; Vandenbogaert, Mathias ; Weng, Zhiping ; Workman, Christopher ; Ye, Chun ; Zh, Zhou

Assessing computational tools for the discovery of transcription factor binding sites. Journal Article

Nat Biotechnol, 23 (1), pp. 137-44, 2005, ISSN: 1087-0156.

Abstract | Links | BibTeX | Tags: Motif Finding

Yakhini, Zohar; Zilberstein, Chaya Ben-Zaken ; Eskin, Eleazar

Using Expression Data to Discover RNA and DNA Regulatory Sequence Motifs Conference

Lecture Notes in Computer Science, 3318/2005 , Lecture Notes in Computer Science Springer Berlin / Heidelberg, 2005, ISSN: 0302-9743 (Print) 1611-3349 (Online).

Abstract | Links | BibTeX | Tags: Motif Finding


Eskin, ; Eleazar, Eleazar

From profiles to patterns and back again: a branch and bound algorithm for finding near optimal motif profiles Conference

RECOMB '04: Proceedings of the eighth annual international conference on Resaerch in computational molecular biology, ACM, New York, NY, USA, 2004, ISBN: 1-58113-755-9.

Abstract | Links | BibTeX | Tags: Motif Finding


Eskin, Eleazar; Keich, Uri; Gelfand, Mikhail S; Pevzner, Pavel A

Genome-wide analysis of bacterial promoter regions. Journal Article

Pac Symp Biocomput, pp. 29-40, 2003, ISSN: 1793-5091.

Abstract | Links | BibTeX | Tags: Motif Finding


Eskin, Eleazar; Pevzner, Pavel A

Finding composite regulatory patterns in DNA sequences. Journal Article

Bioinformatics, 18 Suppl 1 , pp. S354-63, 2002, ISSN: 1367-4803.

Abstract | Links | BibTeX | Tags: Motif Finding